Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848474.1_cds_XP_016510405.1_23243
CDS Infomation

[gene=LOC107827729] [db_xref=GeneID:107827729] [protein=protein FRIGIDA-like] [protein_id=XP_016510405.1] [location=complement(12199..14256)] [gbkey=CDS]
Sequence

ATGAATACTCGGGCGGATGCCGCCACCGCCACCGCCGGCAGTGCTACGCCATCATTGGCC
ACGCAATTAGTCAAAGCAGAACAGAAACAGTCGGAATTGCAACAATCTTCAACACATTTT
ACACATTCGGTTCCCATTGCGAATCTCCGCAAACTCTCCGACGCGCTCTCCGGTTTCCAA
CGATGTTTCGGTGAGTTACAACGGCACATCGATACCATCCGAACCTCAATAGACTCCTCT
TTGCTACTACTACTGCCGCGAAACAATGAACATTCCACTACTACCACTCCGCCGGCACCG
CCATTCCTAGAGCCAGAACCATATGAACTCTCTGAAGAGGAAGAGGAAGAGGAAGAGAAA
GAGAAACTGAAATCCCCTCCTCGTGCAGAGCCAAAATCGTTTCGTTTAGAGCTGAAATTT
CCTCCTCCTTCAGTGGTGGAAATCCTGTGCGAAACAATGAACAGTAACGGTCTGCAGAAG
TACATGATAAGGCATCTCTCAAATATAAAAACACTGAAACGAAGAGTTCCAAAGGCATTG
AAACTCTCGCCTAATCCTGCAAGGCTGATATTGGAATGCATCGGCGATTTTTATTCTCAA
GGGAGCGACACTTATGTCCAAGGCTCATCTGAAAGGCAGGTTAAAGTATTGCTTTTGGAG
TGCTTCTTGAATATGATGGGAGAGTCCGTAATTAAGAATGAGGTGAAGGAAGAGGCAGAA
CAAGCAGCTTTAACATGGATTAAGAGGTTGAATTTCAAAGGAGGTATACTACAGGCTCAG
GAAATTGAATGTCGGGGTTTGCTGTTGCTTATTGGGTGTTTCGGGATTCCACAAGCATTT
ACAAATAAAGATATCAAGGATTTGCTGCACCAAAGTTACATCAAGATGATTTCTGCTTCC
CTTAGGAGATCAGGTTTTCTCATGGCAAAGATTCCAGAAATAATAGAGGGTATGTTGAAA
CAAAATAGGGTAGTTGAAGCCGTTCATTTTGTCTATTGTTTTGGACTTGAGGAAAGGTTT
AACCCTCGTAGACTGTTAACATCATTTTTACAAGAGTCTGAAGTGTCATTATTGGACACA
ATTAAGAGTTATGAAGAAATGAAGGGATCACAAGATTCAGTTGTTGTTGCTAAGAGTATT
GGTGTAAGGAGGTACGTGGCTGGTTTGAGATCTGTCATCCAATGTTTGGGACGTCACAAT
ATTGATCATTCCAAATTTCTTCCAGGGTGGCAATTTGGAATGAAAATAACACGCTTGGAG
AGAGAAATTGCTCAATTGAGGAAGAGGATGAAAATTGATCGAGAGGTGGCACGAAAGAGA
AAAATTGATGAAGCTAAGTGGTTAGGCAACAAAGAAGTGAAGCACTCACACTTTCCAAAT
CCATGTCTGCCACAACATCGTCGAGTTGCTAATCATGTTGATGATAGCAACAACACCTTG
TTAGAAGGTGGTGGGACTGCTGACCACATTTATGGTCATTCTCTGTACCCTCCGGTATTG
CATGGACCTGTTACAGGTTCGATTCATGAAAATGTTGTTGGCTCGCTGGCAGGACCTGGA
GCAGGTATATCAGCAAGTGCTGATGGTATTCATGCAGGTATATCAGCAGGCACGGATGTT
GTTATGCAAGGAGTTTCATATGCTGGTGGTCATGAAGGAAGTCAAGTTAATTGTACAACC
GGGCAAATGGGAAGTCATGCTGGTCAGTTATATGGATCACGCGGTGATGCAGCCGTATAT
GACAGACTGCCTTCCCACAGCTATGCTTATAGGCCATCATCCTACTTGGAATGCTCAGGC
TCTATGGGGTTGCCAAACACCATACTTGGTGATGCTTATCGGCCTCCACCATACTTGGAA
TGCTCTATGGGGTTGCCAAACACCATACTTGGTGATGCTTATCGGCCTCCACCATACTTG
GAATGCTCTATGGGGTTGCCAAACACCATACTTGGTGATGCTTATCGGCCTCCACCATAC
TTGGAATGCTCTATGGGGTTGCCAAGCACCATAACTGGTGATGTGTTTAGGCCTCGACCA
TACCAGCACCATACATAG

Peptide Sequence

PEP ID

XP_016510405.1
PEP Infomation

PREDICTED: protein FRIGIDA-like [Nicotiana tabacum]
Sequence

MNTRADAATATAGSATPSLATQLVKAEQKQSELQQSSTHFTHSVPIANLRKLSDALSGFQ
RCFGELQRHIDTIRTSIDSSLLLLLPRNNEHSTTTTPPAPPFLEPEPYELSEEEEEEEEK
EKLKSPPRAEPKSFRLELKFPPPSVVEILCETMNSNGLQKYMIRHLSNIKTLKRRVPKAL
KLSPNPARLILECIGDFYSQGSDTYVQGSSERQVKVLLLECFLNMMGESVIKNEVKEEAE
QAALTWIKRLNFKGGILQAQEIECRGLLLLIGCFGIPQAFTNKDIKDLLHQSYIKMISAS
LRRSGFLMAKIPEIIEGMLKQNRVVEAVHFVYCFGLEERFNPRRLLTSFLQESEVSLLDT
IKSYEEMKGSQDSVVVAKSIGVRRYVAGLRSVIQCLGRHNIDHSKFLPGWQFGMKITRLE
REIAQLRKRMKIDREVARKRKIDEAKWLGNKEVKHSHFPNPCLPQHRRVANHVDDSNNTL
LEGGGTADHIYGHSLYPPVLHGPVTGSIHENVVGSLAGPGAGISASADGIHAGISAGTDV
VMQGVSYAGGHEGSQVNCTTGQMGSHAGQLYGSRGDAAVYDRLPSHSYAYRPSSYLECSG
SMGLPNTILGDAYRPPPYLECSMGLPNTILGDAYRPPPYLECSMGLPNTILGDAYRPPPY
LECSMGLPSTITGDVFRPRPYQHHT

Transcript Sequence

Gene sequence data has not been registered.